sed - How to arrange the lines in ascending order -


i have folder contains 200 pdb files.i arrange atom lines of pdb files in ascending order based on 6th column. in-place editing each pdb file in folder. appreciated.

atom     81  n   asn 248      38.791 -16.708  12.507  1.00 52.04           n  atom     82  ca  asn 248      39.443 -17.018  11.206  1.00 54.49           c  atom    422  c   ser 205      70.124 -29.955   8.226  1.00 55.81           c  atom    423  o   ser 205      70.901 -29.008   8.438  1.00 46.60           o  atom    303  n   met 231      61.031 -38.086  -3.054  1.00 52.32           n  atom    304  ca  met 231      60.580 -39.074  -4.047  1.00 64.11           c atom    392  c   glu b  65      23.248  10.071  -7.321  1.00 48.26           c   atom    393  o   glu b  65      24.465  10.200  -7.158  1.00 46.53           o atom    394  o   glu b  65      24.465  10.200  -7.158  1.00 46.53           o

desired output

atom    392  c   glu b  65      23.248  10.071  -7.321  1.00 48.26           c atom    393  o   glu b  65      24.465  10.200  -7.158  1.00 46.53           o atom    394  o   glu b  65      24.465  10.200  -7.158  1.00 46.53           o  atom    422  c   ser 205      70.124 -29.955   8.226  1.00 55.81           c   atom    423  o   ser 205      70.901 -29.008   8.438  1.00 46.60           o  atom    303  n   met 231      61.031 -38.086  -3.054  1.00 52.32           n atom    304  ca  met 231      60.580 -39.074  -4.047  1.00 64.11           c atom     81  n   asn 248      38.791 -16.708  12.507  1.00 52.04           n atom     82  ca  asn 248      39.443 -17.018  11.206  1.00 54.49           c

use sort.

sort -n -k 6 inputfile

-n performs numeric sort, , -k tells sort via key.

edit: in-place sorting, use -o option:

sort -n -k 6 inputfile -o inputfile

Comments

Post a Comment

Popular posts from this blog

jquery - How can I dynamically add a browser tab? -

since using iframes house external pages are, accounts "not preferred method" , disallowed sites (flickr, one), want dynamically generate browser tabs. e.g., when user submits form, want dynamically generate tab on browser in response submitted. e.g., might want add new tab url like: http://www.bigsurgarrapata.com/contact how in jquery? you want form target attribute action attribute. http://www.w3schools.com/tags/att_form_target.asp browsers have ultimate control on result of target attribute open new tab value of _blank. <form action="contact_submit.php" target="_blank" method="post">
Read more

keyboard - C++ GetAsyncKeyState alternative -

i using windows.h library's getasynckeystate function define key pushed on keyboard . here program returns int value of pushed key example. #include <iostream> #include <windows.h> using namespace std; int main (){ char i; for(i=8;i<190;i++){ if(getasynckeystate(i)== -32767){ cout<<int (i)<<endl; } } return 0; } but trying make opengl simple game , function appeared slow . there function not need cycle 180 times , if statement . thanks you're trying make opengl game, you're going use glfw. if that's case can away using glfwgetkey() such: if (glfwgetkey(glfw_key_up) == glfw_press) {...} if (glfwgetkey(glfw_key_down) == glfw_press) {...} that method nicely explained in tutorial 6 opengl-tutorial.org . should start first tutorial of beginners tutorials , later intermediate tutorials . if you're going make win32 window can listen wm_keydown or wm_keyup messages , virtua...
Read more

android - java.net.UnknownHostException(Unable to resolve host “URL”: No address associated with hostname) -

i developing app testing asp.net webservice in android.for simple webservice adding 2 numbers used.where numbers passed parameters.the result in dialogue.the webserver works in local. when application runs following result exception.i provided internet permission in manifest. java.net.unknownhostexception(unable resolve host “ http://url.com/ ”: no address associated hostname) my code given below main activity public static string rslt=""; /** called when activity first created. */ @override public void oncreate(bundle savedinstancestate) { super.oncreate(savedinstancestate); setcontentview(r.layout.activity_main); button b1=(button)findviewbyid(r.id.button1); final alertdialog ad=new alertdialog.builder(this).create(); b1.setonclicklistener(new onclicklistener() { @override public void onclick(view arg0) { // todo auto-generated method stub try { ...
Read more