split fields using awk or sed -


i have file column shown below,

 chr1 412573  .     c 2754.00      .  ac=2;af=1.00;an=2;dp=59;dels=0.00;fs=0.000;haplotypescore=0.0000;mleac=2;mleaf=1.00;mq=59.22;m    q0=0;qd=35.08;sb=-5.570e+02;resource.eff=non_synonymous_coding(moderate|missense|gcg/gtg|a124v |rbfa|protein_coding|coding|enscaft00000037436|5)

i want split , extract data in 8th column shown below,

chr1 412573  .     c 2754.00      .  59    59.22    non_synonymous_coding    moderate    missense    gcg/gtg    a124v    rbfa   protein_coding    coding    enscaft00000037436    5 

awk '/dp=/ || /mq=/ || /eff=/ {gsub("[\\|()]", "\t"); print $2}' rs=';' ors='\t' fs='='

result

 59  59.22   non_synonymous_coding   moderate    missense    gcg/gtg a124v   rbfa    protein_coding  coding  enscaft00000037436  5

Comments

Post a Comment

Popular posts from this blog

Change php variable from jquery value using ajax (same page) -

what i'm trying this: i've php global variable $currentid , simple jquery script check if there "id" (page) in hash of url , if yes wanted give value $currentid . i've been reading lot , notice shall use ajax i'm not managing it. my code is: <script type="text/javascript"> $(document).ready(function(){ if (parent.location.hash != '' ) { var thecurrentid = parent.location.hash.split('#')[1]; $.ajax({ url: 'my.php', //current page type: 'post', data: {theid: thecurrentid }, datatype: 'json', success: function () { } }); } // code here }); </script> could me please? thank in advance. php server side language, meaning once has sent data browser, php variables , data cannot changed... however, using ajax, can send request php page , change data in dom based on result. consider th...
Read more

Pull out data related to my apps from Android Play Store and iOS App Store -

i want pull out data related apps (ratings, reviews, etc) google play store , apple app store ? how can accomplish ? i have found open source apis google mentioned not reliable. also there paid apis (e.g. appfigures) available. has idea how able pull data these play stores ?? i looking direction on how can accomplish this. can suggest ? we (appfigures) have been working on developing infrastructure give ability reviews , bunch of other data points major app stores several years :] we make available via our api though may want check out.
Read more

How can I fetch data from a web server in an android application? -

i want retrieve data web server in android application, , don't know begin. should use web services? i recommend these tutorials: connect android php , mysql , json in android , php , mysqli i used these tutorials , managed trying working without difficulty. between them describe each step in how attempting @ each stage, android application, database , web server side , has information included can process , use received information the thing add connect android php , mysql tutorial makes use of mysql_ in php deprecated. better use mysqli why included third link. the basic outline of want this: 1) in android app make request server php script using class this: import java.io.bufferedreader; import java.io.ioexception; import java.io.inputstream; import java.io.inputstreamreader; import java.io.unsupportedencodingexception; import java.util.list; import org.apache.http.httpentity; import org.apache.http.httpresponse; import org.apache.http.namevaluepair...
Read more