python - Gensim ImportError in PyCharm: No module named scipy.sparse -


i on mac os x 10.8.3 (mountain lion) , trying run script in pycharm. python 2.7.2 installed, have installed canopy , gensim. not understand causing error i'm getting.

scipy.__version__

shows v 0.11 installed.

here entirety of output following run of script:

/system/library/frameworks/python.framework/versions/2.7/bin/python "/util/lsa/base lsa.py"  traceback (most recent call last):  file "/util/lsa/base lsa.py", line 8, in <module>     gensim import corpora, models, similarities, matutils file "/library/python/2.7/site-packages/gensim-0.8.6-py2.7.egg/gensim/__init__.py", line 7, in <module>     import utils, matutils, interfaces, corpora, models, similarities file "/library/python/2.7/site-packages/gensim-0.8.6-py2.7.egg/gensim/matutils.py", line 20, in <module>     import scipy.sparse importerror: no module named scipy.sparse  process finished exit code 1

i'd suggest using python.org version of python, not 1 came osx, there issues overcome installing latest version - 2.7.4 in case of 2.x branch. don't worry breaking anything, both versions happily coexist together. once have that, can install latest numpy , scipy binaries (get 10.6 dmg files). numpy required scipy work.

make sure set pycharm work new version of python, , double-check modules installed in right site-packages directory (it should /library/frameworks/python.framework/versions/2.7/lib/python2.7/site-packages/). can copy of files in /library/python/2.7/site-packages/ directory 1 mentioned, major.minor version of python (2.7) still same. then, should go. want symlink /usr/local/bin/python /library/frameworks/python.framework/versions/2.7/bin/python (it may already) make easier shebang line, , don't forget put /usr/local/bin in front of /usr/bin in path when command-line work, , #!/usr/bin/env python shebangs. luck!


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